If your server system drive is running out of space and you have moved everything you could to another volume take a look at this detailed TechNet article on moving WSUS database...
http://blogs.technet.com/b/sbs/archive/2009/09/23/how-to-move-wsus-content-and-database-files-to-a-different-partition.aspx
Below is another good post on how to uninstall / reinstall corrupted WSUS installation when normal procedures have failed...
http://davidvielmetter.com/tricks/wsus-wont-uninstall-or-re-install/
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